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A next-generation of biomonitoring to detect global ecosystem change

David Bohan , Dominique Gravel , Alireza Tamaddoni-Nezhad , C. Vacher , Stephane S. Robin et al.
Ouvrages hal-03158319v1
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Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls

Didac Barroso‐bergada , Charlie Pauvert , Jessica Vallance , Laurent Deliere , David Bohan et al.
Molecular Ecology Resources, In press, ⟨10.1111/1755-0998.13302⟩
Article dans une revue hal-03049733v1

Key questions for next-generation of biomonitoring

Andreas Makiola , Zacchaeus G. Compson , Donald J Baird , Matthew A. Barnes , Sam P Boerlijst et al.
A next-generation of biomonitoring to detect global ecosystem change. Frontiers Research Topics, Frontiers in Ecology and Evolution, pp.91-104, 2020, 978-2-88966-027-8. ⟨10.3389/978-2-88966-027-8⟩
Chapitre d'ouvrage hal-03534007v1
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Heterogeneity of selection and the evolution of resistance

Denis D. Bourguet , François F. Delmotte , Pierre P. Franck , Xavier X. Reboud , Corinne C. Vacher et al.
Trends in Ecology and Evolution, 2013, 28 (2), pp.110-118. ⟨10.1016/j.tree.2012.09.001⟩
Article dans une revue hal-01000430v1

Gestion des adventices – Herbicides : la résistance existait avant eux

Christophe Délye , Ludovic Bonin , Lise Gautellier-Vizioz , Corinne Vacher
Perspectives Agricoles, 2014, 409, pp.34-35
Article dans une revue hal-01190134v1

Next-generation global biomonitoring: large-scale, automated reconstruction of ecological networks

David Bohan , Corinne Vacher , Alireza Tamaddoni-Nezhad , Alan Raybould , Alex J Dumbrell et al.
Trends in Ecology and Evolution, 2017, 32 (7), pp.477-487. ⟨10.1016/j.tree.2017.03.001⟩
Article dans une revue hal-01606909v1
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Its all fun guys: a comparison of bioinformatic pipelines for metabarcoding plant and soil fungal communities

Charlie Pauvert , Marc Buee , Valerie Laval , Veronique Edel-Hermann , Laure Fauchery et al.
International Phytobiomes Conference 2018, Dec 2018, Montpellier, France. 2018
Poster de conférence hal-01938707v1

Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere

Philippe P. Lemanceau , Matthieu Barret , Sylvie Mazurier , Samuel Mondy , Barbara Pivato et al.
How plants communicate with their biotic environment, 82, Academic Press - Elsevier, 2017, Advances in Botanical Research, 978-0-12-801431-8. ⟨10.1016/bs.abr.2016.10.007⟩
Chapitre d'ouvrage hal-01608302v1

Learning ecological networks from next-generation sequencing data

Corinne Vacher , Alireza Tamaddoni-Nezhad , Stefaniya Kamenova , Nathalie Dubois Peyrard , Yann Moalic et al.
Ecosystem Services: From Biodiversity to Society, Part 2, 54, 2016, Advances In Ecological Research, ⟨10.1016/bs.aecr.2015.10.004⟩
Chapitre d'ouvrage hal-01533861v1

Phénomène de résistance : des rouages encore méconnus

Christophe Délye , Ludovic Bonin , Lise Gautellier-Vizioz , Corinne Vacher
Perspectives Agricoles, 2014, 409, pp.36
Article dans une revue hal-01190135v1

10 years later: revisiting priorities for science and society a decade after the millennium ecosystem assessment

Christian Mulder , Elena M. Bennett , David Bohan , Michael Bonkowski , Stephen R. Carpenter et al.
Advances in Ecological Research, 2015, 53, ⟨10.1016/bs.aecr.2015.10.005⟩
Article dans une revue hal-02801412v1

Machine learning of microbial interactions using abductive ILP and hypothesis frequency/compression estimation

Didac Barroso-Bergada , Alizera Tamaddoni-Nezhad , Stephen H. Muggleton , Corinne Vacher , Nika Galic et al.
30th International Conference on Inductive Logic Programming (ILP) held as part of the 1st International Joint Conference on Learning and Reasoning (IJCLR), Oct 2021, Virtuel, France
Communication dans un congrès hal-03692876v1

Microbial metacommunity: a METABAR coding approach

Marc Buee , Matthieu Barret , Maria Bernard , Didier Debroas , Isabelle Domaizon et al.
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Communication dans un congrès hal-01607836v1

Metagenomic next⁃generation sequencing (mNGS) data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

Didac Barroso-Bergadà , Marie Massot , Noémie Vignolles , Julie Faivre d'Arcier , Emilie Chancerel et al.
Phytobiomes Journal, 2022, ⟨10.1094/PBIOMES-02-22-0008-FI⟩
Article dans une revue hal-03689876v1
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Structure of the scientific community modelling the evolution of resistance

Denis D. Bourguet , François F. Delmotte , Pierre Franck , Thomas T. Guillemaud , Xavier X. Reboud et al.
PLoS ONE, 2007, 2 (12), pp.e1275. ⟨10.1371/journal.pone.0001275⟩
Article dans une revue hal-02656910v1

Microbial association networks give relevant insights into plant pathobiomes

Charlie Pauvert , Tania Fort , Agnes Calonnec , Julie Faivre D’arcier , Emilie Chancerel et al.
2021
Pré-publication, Document de travail hal-03218256v1

Biomonitoring for the 21st century: integrating next-generation sequencing into ecological network analysis

Stéphane A.P. Derocles , David Bohan , Alex J. Dumbrell , James J.N. Kitson , François Massol et al.
Next Generation Biomonitoring: Part 1, 58, 293 p., 2018, Advances In Ecological Research, 978-0-12-813949-3. ⟨10.1016/bs.aecr.2017.12.001⟩
Chapitre d'ouvrage hal-02790509v1
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Influence of landscape structure and cropping system on microbial diversity and microbial interactions in vineyards

Corinne Vacher , Charlie Pauvert , Thomas Fort , Marc Buee , Valerie Laval et al.
Séminaire Pôle de Protection des Plantes (CIRAD 3P), Nov 2018, St-Pierre de la Réunion, France
Communication dans un congrès hal-02787591v1

Gestion des résistances. L’importance des modalités de déploiement des substances

. Rex Consortium (resistance To Xenobiotics) , Denis D. Bourguet , François F. Delmotte , Pierre Franck , Thomas T. Guillemaud et al.
Phytoma , 2013, 669, pp.10-14
Article dans une revue hal-02643623v1
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Combining selective pressures to enhance the durability of disease resistance genes

Denis Bourguet , François Delmotte , Pierre Franck , Thomas Guillemaud , Xavier X. Reboud et al.
Frontiers in Plant Science, 2016, 7, pp.1-8. ⟨10.3389/fpls.2016.01916⟩
Article dans une revue hal-01533924v1
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The functional microbiome of grapevine throughout plant evolutionary history and lifetime

Paola Fournier , Lucile Pellan , Didac Barroso-Bergadà , David Bohan , Thierry Candresse et al.
Advances in Ecological Research, 2022, Advances in Ecological Research, 67, pp.27-99. ⟨10.1016/bs.aecr.2022.09.001⟩
Article dans une revue hal-03858395v1

Networking our way to better ecosystem service provision

David Bohan , Dries Landuyt , Athen Ma , Sarina Macfadyen , Vincent V. Martinet et al.
Trends in Ecology and Evolution, 2016, 31 (2), pp.105-115. ⟨10.1016/j.tree.2015.12.003⟩
Article dans une revue hal-01298064v1
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The skill and style to model the evolution of resistance to pesticides and drugs

Denis Bourguet , François Delmotte , Pierre Franck , Thomas Guillemaud , Xavier X. Reboud et al.
Evolutionary Applications, 2010, 3 (4), pp.375-390. ⟨10.1111/j.1752-4571.2010.00124.x⟩
Article dans une revue hal-01219017v1

Analyser le microbiote pour identifier de nouveaux agents de bio-contrôle des maladies de la vigne

Corinne C. Vacher , David Bohan
Rencontres chercheurs professionnels Sortir des pesticides en viticulture. INRAE, Cultiver Protéger Autrement, Mar 2022, Beaune, Bordeaux, Montpellier, France
Communication dans un congrès hal-03717294v1

Machine Learning of Microbial Interactions Using Abductive ILP and Hypothesis Frequency/Compression Estimation

Didac Barroso-Bergada , Alireza Tamaddoni-Nezhad , Stephen Muggleton , Corinne Vacher , Nika Galic et al.
Inductive Logic Programming, 13191, Springer International Publishing, pp.26-40, 2022, Lecture Notes in Computer Science, 978-3-030-97454-1; 978-3-030-97453-4. ⟨10.1007/978-3-030-97454-1_3⟩
Chapitre d'ouvrage hal-03689865v1

10 years later: Revisiting priorities for science and society a decade after the Millennium Ecosystem Assessment

Christian Mulder, , Elena M Bennett , David Bohan , Michael Bonkowski , Stephen R Carpenter et al.
Advances in Ecological Research, 2015, 53, pp.1-53. ⟨10.1016/bs.aecr.2015.10.005⟩
Article dans une revue hal-01239539v1

Biomonitoring for the 21st Century: Integrating Next-Generation Sequencing Into Ecological Network Analysis

Stéphane Derocles , David Bohan , Alex J Dumbrell , James J. N. Kitson , Francois Massol et al.
Advances in Ecological Research, 2018, 58, pp.1-62. ⟨10.1016/bs.aecr.2017.12.001⟩
Article dans une revue hal-01713119v1
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Key questions for next-generation biomonitoring

Andreas Makiola , Zacchaeus G. Compson , Donald J Baird , Matthew A. Barnes , Sam Philip Boerlijst et al.
Frontiers in Environmental Science, In press, 7, ⟨10.3389/fenvs.2019.00197⟩
Article dans une revue hal-02402296v1
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Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline

Charlie Pauvert , Marc Buee , Valerie Laval , Veronique Edel-Hermann , Laure Fauchery et al.
Fungal Ecology, 2019, 41, pp.23 - 33. ⟨10.1016/j.funeco.2019.03.005⟩
Article dans une revue hal-02627344v1