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A next-generation of biomonitoring to detect global ecosystem change

David Bohan , Dominique Gravel , Alireza Tamaddoni-Nezhad , C. Vacher , Stephane S. Robin et al.
Ouvrages hal-03158319v1
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Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls

Didac Barroso‐bergada , Charlie Pauvert , Jessica Vallance , Laurent Deliere , David Bohan et al.
Molecular Ecology Resources, In press, ⟨10.1111/1755-0998.13302⟩
Article dans une revue hal-03049733v1

Key questions for next-generation of biomonitoring

Andreas Makiola , Zacchaeus G. Compson , Donald J Baird , Matthew A. Barnes , Sam P Boerlijst et al.
A next-generation of biomonitoring to detect global ecosystem change. Frontiers Research Topics, Frontiers in Ecology and Evolution, pp.91-104, 2020, 978-2-88966-027-8. ⟨10.3389/978-2-88966-027-8⟩
Chapitre d'ouvrage hal-03534007v1
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A multi-scale epidemic model of enteric infection with heterogeneous shedding resulting from host-microbiota-pathogen interactions

Simon Labarthe , Béatrice Laroche , Bastien Polizzi , Florian Patout , Magali Ribot et al.
ECMTB 2022 - 12th European Conference on Mathematical and Theoretical Biology, Sep 2022, Heidelberg, Germany.
Poster de conférence hal-03834709v1
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Consistent response of weeds according to Grime's CSR strategies along disturbance and resource gradients in Bordeaux vineyards

Guillaume Fried , Cécile Blanchet , Loreleï Cazenave , Marie‐Charlotte Bopp , Elena Kazakou et al.
Weed Research, 2022, 62, pp.347-359. ⟨10.1111/wre.12549⟩
Article dans une revue hal-03759629v1

Machine learning of microbial interactions using abductive ILP and hypothesis frequency/compression estimation

Didac Barroso-Bergada , Alizera Tamaddoni-Nezhad , Stephen H. Muggleton , Corinne Vacher , Nika Galic et al.
30th International Conference on Inductive Logic Programming (ILP) held as part of the 1st International Joint Conference on Learning and Reasoning (IJCLR), Oct 2021, Virtuel, France
Communication dans un congrès hal-03692876v1
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Dataset of Phanerozoic continental climate and Köppen–Geiger climate classes

Alexandre Pohl , Thomas Wong Hearing , Alain Franc , Pierre Sepulchre , Christopher Scotese et al.
Data in Brief, 2022, 43, pp.108424. ⟨10.1016/j.dib.2022.108424⟩
Article dans une revue hal-03707295v1

Metagenomic next⁃generation sequencing (mNGS) data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

Didac Barroso-Bergadà , Marie Massot , Noémie Vignolles , Julie Faivre d'Arcier , Emilie Chancerel et al.
Phytobiomes Journal, 2022, ⟨10.1094/PBIOMES-02-22-0008-FI⟩
Article dans une revue hal-03689876v1
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The functional microbiome of grapevine throughout plant evolutionary history and lifetime

Paola Fournier , Lucile Pellan , Didac Barroso-Bergadà , David Bohan , Thierry Candresse et al.
Advances in Ecological Research, 2022, Advances in Ecological Research, 67, pp.27-99. ⟨10.1016/bs.aecr.2022.09.001⟩
Article dans une revue hal-03858395v1

Microbial association networks give relevant insights into plant pathobiomes

Charlie Pauvert , Tania Fort , Agnes Calonnec , Julie Faivre D’arcier , Emilie Chancerel et al.
2021
Pré-publication, Document de travail hal-03218256v1

Modéliser les interactions du vivant, en lien avec les milieux et les contextes socio-économiques

Chantal Gascuel , Francoise Lescourret , Herve Monod , Lionel Roques , David Bohan et al.
Caquet, Thierry Gascuel, Chantal Tixier-Boichard, Michèle Coordination éditoriale. L’agroécologie : des recherches pour la transition des filières et des territoires. Collection Matière à débattre et décider, Collection Matière à débattre et décider (5), Éditions Quæ, pp.71-80, 2020, 978-2-7592-3129-4
Chapitre d'ouvrage hal-02929956v1
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Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project

M. Dubart , P. Alonso , D. Barroso-Bergada , N. Becker , K. Bethune et al.
Bohan D.A.Dumbrell A.J.Vanbergen A.J. The Future of Agricultural Landscapes, Part III, 65, Elsevier, pp.367-430, 2022, Advances in Ecological Research, 9780323915038. ⟨10.1016/bs.aecr.2021.10.007⟩
Chapitre d'ouvrage hal-03634351v1

Promoting crop pest control by plant diversification in agricultural landscapes: A conceptual framework for analysing feedback loops between agro-ecological and socio-economic effects

A. Vialatte , Anaïs Tibi , Valérie Angeon , Laurent Bedoussac , Frédéric Fabre et al.
David A. Bohan; Alex J. Dumbrell; Adam J. Vanbergen. The Future of Agricultural Landscapes, Part III, 65, Elsevier, pp.133-165, 2021, Advances in Ecological Research,, ⟨10.1016/bs.aecr.2021.10.004⟩
Chapitre d'ouvrage hal-03477116v1
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Integrating ecological networks modelling in a participatory approach for assessing impacts of planning scenarios on landscape connectivity

Yohan Sahraoui , Charles de Godoy Leski , Marie-Lise Benot , Frederic Revers , Denis Salles et al.
Landscape and Urban Planning, 2021, 209, pp.1-14. ⟨10.1016/j.landurbplan.2021.104039⟩
Article dans une revue hal-03155195v1
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Quantitative comparison of geological data and model simulations constrains early Cambrian geography and climate

Thomas W Wong Hearing , Alexandre Pohl , Mark Williams , Yannick Donnadieu , Thomas H P Harvey et al.
Nature Communications, 2021, 12, ⟨10.1038/s41467-021-24141-5⟩
Article dans une revue hal-03273912v1

Machine learning of microbial interactions using abductive ILP and hypothesis frequency/compression estimation

Didac Barroso-Bergada , Alireza Tamaddoni-Nezhad , Stephen Muggleton , Corinne Vacher , Nika Galic et al.
30. International Conference on Inductive Logic Programming (ILP) held as part of the 1st International Joint Conference on Learning and Reasoning (IJCLR), Oct 2021, Virtuel, France. pp.26-40, ⟨10.1007/978-3-030-97454-1_3⟩
Communication dans un congrès hal-03647109v1

Between models and narratives: transitions in settlement systems

Cécile Tannier , Alain Franc , Ouriachi Marie-Jeanne , Elisabeth Zadora-Rio
Léna Sanders. Settling the world : From Prehistory to the Metropolis Era, Presses universitaires François-Rabelais, Chapter 14, 2021, 9782869068551
Chapitre d'ouvrage hal-03407680v1

Machine Learning of Microbial Interactions Using Abductive ILP and Hypothesis Frequency/Compression Estimation

Didac Barroso-Bergada , Alireza Tamaddoni-Nezhad , Stephen Muggleton , Corinne Vacher , Nika Galic et al.
Inductive Logic Programming, 13191, Springer International Publishing, pp.26-40, 2022, Lecture Notes in Computer Science, 978-3-030-97454-1; 978-3-030-97453-4. ⟨10.1007/978-3-030-97454-1_3⟩
Chapitre d'ouvrage hal-03689865v1
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Mobiliser les agroéquipements et le numérique pour des systèmes de culture sans pesticides

Xavier X. Reboud , Laurent Bedoussac , Vincent Cellier , Stephane Cordeau , Sylvain Delzon et al.
Zéro pesticide : un nouveau paradigme de recherche pour une agriculture durable, Editions QUAE, 2022, 978-2-7592-3310-6
Chapitre d'ouvrage hal-03609281v1
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Key questions for next-generation biomonitoring

Andreas Makiola , Zacchaeus G. Compson , Donald J Baird , Matthew A. Barnes , Sam Philip Boerlijst et al.
Frontiers in Environmental Science, In press, 7, ⟨10.3389/fenvs.2019.00197⟩
Article dans une revue hal-02402296v1

Valoriser les processus écologiques, hydrobiogéochimiques dans des paysages multifonctionnels.

Sandrine Petit , Stéphanie Aviron , Thierry Caquet , Marc Deconchat , Sabrina Gaba et al.
Dedieu, Benoit; Detang-Dessandre, Cécile; Dupraz, Pierre; Hinsinger, Philippe; Médale, Françoise; Reboud, Xavier; Soussana, Jean-François; Alban, Thomas. L’agroécologie : des recherches pour la transition des filières et des territoires. Collection Matière à débattre et décider, 3, Éditions Quæ, pp.47-58, 2020, 978-2-7592-3129-4
Chapitre d'ouvrage hal-02959717v1